Update posted:
http://sh4.skwas.net/changelog.aspx
[edit] privateer, thanks for the tip. I had done pretty much the same thing last night after CapnScurvy's report. I opened flags.dat and there I saw 8 bytes were dropped by S3D on that controller. It just took me a couple of scans over the code to see the problem, because it got a little messy over the past weeks...