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Originally Posted by Bosje
my new version of jsgme grays out any mods that are affected by new ones on top
so my guess would be that it's safe to move those mods which are not greyed out around, but if mess it up you'll end up with PE3.3 files in your TMO folder etc
safe bet is to always remove em in the reverse order of installing em, so yes bottom up
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I could be mistaken, so someone correct me if I'm wrong, but I don't believe JSGME changes any of the files in the mods folders, so, no matter what order you do things in, JSGME isn't going to put any files from one mod into another mods folder. And, yes, the current version (and some previous versions, since 1.1.4, I believe) won't let you uninstall in the wrong order. I believe the greyed out effect was added just to let you know that a mod has had files over-written. All of the changes are in the JoneSoft.txt file that is installed with JSGME.