Judging from the file-structure of the mini-patch, I think it goes into the main SH3 folder.
The fix has:
1- a data folder
2- a documentation folder
3- a MODS folder
1 and 2 overwrite SH3/GWX-files.
3 overwrites the old light-harbor mod.
At least, that's how I understand it.
Haven't installed it yet, though....1st need to get back into base, but I'm close.
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