I finally sorted out what was wrong with effects and edited files sometimes when I complained that changes not works or works wrong.. it wasn't a software conflict..
Sometimes in the test mod folder remain some files.. e.g.
old_TDW_FXU_TorpExplosion_Particles.dat or
edited_TDW_FXU_TorpExplosion_Materials.dat.. and these files get into the game folder along with other files during enabling through JSGME.. it's weird, but as game doesn't find needed effect in the main file (
TDW_Particles.dat or
TDW_Materials.dat), it get this effect from any other file..