You appear to be right about it being the stern deck gun bug. Editing out the upgrades like you pointed out doesn't seem to change anything. I'm toying around with attempting to edit the gun and slots back into a the ActiveUserPlayerUnits.upc but having mixed results - I can fully replace it with the one from the last patrol and it seems to carry over properly but that loses all crew improvement over the same time period. Likely not a major concern seeing as it wasn't a phenomenal patrol but still somewhat frustrating over time.
Something that might help - I was originally Pac Fleet but was transferred mid-campaign (when I was almost home to Pearl, actually - argh!) to Fremantle. Any advice on the best way to achieve or create a transfer back to Pearl and pick up a Gato?
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