Thanks for the reply, I un installed all. Re installed SH3 (fresh install), GWX SH3 commander and only activated the alternate flotilla mod and it showed up.
I usually install MEP 3.0 and the MaGui mod, and the GWX Whilhelmshaven, St Naz, Schluese and xtra ships V6, TMT v2. Do you know or think that one of the last 3 mods modify the flotilla.cfg file (I think that is what is).
I will try each mod and see what it changes or it lists as error or conflict with them.
I have played GWX ever since I got SH3, and really love the mod. The best out there IMHO.
Thank you for all the help so far
Just a quick update. I started installing each mod one at a time and checking to see if the 3rd was still there. Magui F seems to be the problem one. I installed it and no more 3rd, uninstall it 3rd is back. I checked the list of conflicts, I did not see a flotilla.cfg file being replaced, so I am not sure which file is doing it. I will try the GWX Whilhelmshaven, St Naz, Schiuese V6 and see if it does anything.
Again thanks for the all the help I really do appreciate it.