Quote:
Originally Posted by Ryokosman
All that is now done.
Also disabled UAC and am running JSGME in XP service pack 2 compatability mode in admistrator mode.
When "installing" the mods it puts new folders with mod names in the game root but when I start the game I notice no difference...
ARGH 
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Under your MODS directroy, check each mod. Sounds like you'll find a folder in the mod's folder with the same name. For example:
\Silent Hunter 4
-\MODS
--\TMO folder
---\TMO folder
----\TMO Data
Rename the top level TMO folder, and drag that lower level TMO folder to the MODS directory. Delete the now empty renamed folder, and install mod with JSGME.
I have to do that almost every time I download a mod. Sometimes I forget, and get what you describe.
When you open a particular mod under the MODS directory, you should see the DATA directory, and possibly some documentation.