This brings up two things about the latest versions of JSGME:
1) It won't allow you to deactivate a mod if a file in the mod has been overwritten by a later mod. When one mod overwrites files from a previous mod, the font color for the previous mod's name is changed to a grey color. That way you can tell that files from that mod have been overwritten.
2) If, when you are creating a mod, you put the readme and any other documentation in a folder named Documentation, then the files won't be put into the game. And when you right click on a mod with files in a Documentation folder, JSGME will give you the option of viewing the files.
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