No I didn't delete them, I moved them out to the main window of the mod enabler so that they would be enabled.
I have the patcher inside the mod enabler, I followed a tutorial on here that said to do it this way so that if there is a change all you have to do is disable the mods, make the change and then renable the mods.
Being those folders were inside a folder called mods I moved the torpedo one out into the main mods folder.
But I was pretty sure I had enabled it by itself.
Either way I just ran the tutorial tdc and the torps worked just fine. well one didn't go off on magnetic but another did. so margin of error is in there as well
here are some screens of my folder. you can see that I actually do have the mods folder inside you app folder and still it doesn't show what your pic shows.
patcher.JPG yourappfolder.JPG