I got pretty tee'd off with the fatigue models to begin with and turned it off for a while when I got SH3 Commander. That didn't work for me either, so I put the '8-hour' model back in to give me something to do on those looooongg boring bits. Now I have a partially-knackered crew from which I need to select and rest key indivuduals prior to combat. Works a treat!
Note: Don't overfill your boat. A type VII will be perfectly happy with two less crew members and a type IX with six less. A Type II actually needs more than you're allowed without tweaking the files but it can be done.
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