There are a number of mods which instruct you to "unzip directly into the ***** folder - usually "main."
In fact it doesn't make any difference how you do it. You can unzip directly into the folder as instructed, or unzip to a separate folder then copy / cut and paste the unzipped material into the designated folder. In both instances, if the folder doesn't already exist, it will be added; if it does, it will be over-written.
So, in this case, you can unzip the three folders directly into the main SH3 Commander folder and over-write the existing ones, or you can unzip elsewhere and cut/copy and paste the three folders into the main SH3 Commander folder from there. The result is exactly the same.
I unzip mods to a separate hard-drive and then copy them to where I want them them. I keep the unzipped mods and delete the .7z, or .zip files. That way I have the original mod and can build up a back-catalogue
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