PE 3 is not compatible with TM, as they uses 2 different datafiles, if you read the readme file it says so 2-3 times :p
Anyway I have made a TM compatible version where all the TM files where used for PE3.2 go to the mod selection to find out more:
http://www.subsim.com/radioroom/showthread.php?t=136278
There are allso a surprise in the new version