P_T there is a big difference between "compatibility" and "working"
It could well "work" with NYGM but since you made it based on GWX files modified files it will not be "compatible" with NYGM.
You have changed the Zones.cfg and the individual zone templates and sim files for each sub. NYGM will be using a different set up to GWX. This could break features in NYGM no matter how small.
Sorry, but there are no shortcuts here. For this to be truly "compatible" you will have to make it again using NYGM modded files.
Not wanting to pee on your fire, just sharing a little that I have learned from some of the GWX Devs and Technomages.