I think Sailor Steve meant "You might not want to use Patrol if you are using
SH3 Commander". Or at least I certainly hope so as no mod can fix this problem as it's inherent in SH3.
The only difference between SH3Cmdr and SH3Patrol is that SH3Patrol let's you correct the NULL grids after docking at milk cows. I never bothered incorporating that part in SH3Cmdr (the fix is very easy though - you don't even need SH3Patrol if you can edit text files

).