It's best to install a new Sh3Commander and Sh3weather to the GWX 2.0 folder or you could get all sorts of problems. (I'm not using weather for GWX 2.0 but wouldn't think it would cause a problem.)
What I have done is to put all shortcuts into desktop folders GWX 1.3 & GWX 2.0, then use the sh.exe icons to change my folders appearance.
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