i believe the reason you failed with the tweaker is you forgot to remove the copied folder.
the tweaker changes the original file name to "copy of" prefix, ("torpedo.zon" becomes "copy of torpedo.zon") this file must be located and moved out of the original folder or it will not allow the changes to take effect as long as it is there.
if it is a issue with RFB 1.31 then make your changes with RFB 1.31 installed and it will make changes only when that mod is installed.
i usually make changes to all the other mods i use to personalize them to my liking so any mod i use has the changes i like.
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