Still trying to figure out what's wrong on my end.
I have all my games (including SH3) on a seperate, secondary drive (not my OS C: drive).
Is it possible that I need to install the Res fix batch files in my C: Documents and settings/SH3 folder (where the main.cfg resolution file is) instead of my installed SH3.exe is? (F: Program files/UBisoft/SH3)
Other than that, I know I'm doing everything right, but there's a conflict somewhere.
I'll also note that, res fix aside, I can go into my Main.cfg file in the documents and settings folder, and manually change the resolution noted thee, and it has no effect on the game setting.