1.
In the stock game you can see it in the upper right corner of the damage control screen. Some mods, like GWX, remove it. You can put it back with SH3Smdr, or possibly by editing some file also.
2.
If you dock at your base, yes. If you dock anywhere else, I can't tell you, never did this. You can see the status of a compartment by clicking on it in the damage screen or clicking on the compartment name in the same screen.
3. You can estimate the amount of watter already in the sub, from looking at the damage screen. You can actually see the water rising in the sub picture. The rate of flooding can be estimated from the amount of time it takes for a compartment to be completely flooded.
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