Try your "disabling and re-enabling one by one" test first, but to re-draw your attention to the Patch 1.02 release thread (relevant text bolded):
Quote:
Compatibility
- Please do not assume that third-party mods compatible with previous versions of GWX are compatible with GWX 1.02. If in doubt, consult the modder.
- Whilst most existing careers will continue to work with GWX 1.02, the sheer magnitude of the campaign changes means that the GWX team can not guarantee that all existing careers will continue to work.
- SH3 Commander users must d/l and install updated GWX config files. D/l http://www.users.on.net/~jscones/GWX...fg4SH3Cmdr.zip and install as instructed.
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Your existing career might simply not be compatible with the latest patch.