Hmmm.. dumb question, but are you using the "Flavored to taste" mod? I dont think GWX by default makes the buttons transparent. A file in my mod however would do that. The transparent buttons is a side effect from having a clear background on the GUI.
If you are using flavored to taste, all you need to do is disable the mod, then remove the following file:
/data/Menu/Gui/Layout/Bkgr.tga
Then re enable the mod. You wont have the clear GUI anymore, but you'll have your buttons nontransparent anymore either.
Of course if you arent using the flavorted to taste mod, disregard this post as the mad rambleings of someone with too little sleep, and too much caffine.
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