Yes unfortunately its a new mission and you will get a NULL patrol grid - which means you are free to hunt then return home
You can still hand out your medals IIRC but cant upgrade your sub
Before you dock though I would save game and exit and get yourself SH3Commander 2.6
Then reload your game through that - that way you will only spend 1 day in base as opposed to the 28 without it
With SH3Commander I believe you can also set yourself a patrol grid if you use it to start your next patrol - after docking
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