I think if you have last version 2.6 SH3 Cdr recognizes you are docked at a milk cow/supply ship and takes only 1 day for the stop. Before this version I was using a program called SH3 Patrol to adjust the stop time and enter a patrol grid instead of the default "null".
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NYGM 3.4A / Living SH3 V5.1 + SH3 Commander
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