Must - have - more - data...
Seriously though, we do. Run JSGME, and in the middle of the window is a blue "
Tasks..." link. Click on that and choose the bottom item "Export activated mods list to >" and then click either "Clipboard" to Ctrl-V paste it into your next post, or use "Text file" to copy and paste the info later. It will show the path to your game, as well as the mods you are running. That info is needed to diagnose your issue. Also, do you have Manual Targeting selected in the Options screen? Remember, there are Options for both Single Mission play, as well as Career play. The career option are found when you are in the onshore Captain's Office, and click on the wooden radio console to the left. Let us know!