Additionally, this can also be manually edited in the GameplaySettings.cfg, found in the user's Documents folder. This file can be edited with Notepad or similar text editor. At the bottom you will see:
Quote:
[MiscSettings]
AlwaysAutotargeting=1,1,1,1,1;for warships, merchants, uboats, air and, respectively, land targets
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The numbers you have may be different, but '1' is the "Maintain Current Orders" option, which prevents the notice from appearing or your crew doing anything automatically. There is also another GameplaySettings.cfg in the main SH3 folder data/Cfg. I think only the first one matters but I always do both anyway. Hope this helps.