Your mod soup may be causing a problem. Make sure they are all comparable and installed in the correct order. Read ALL documentation with all the mods. Check for problems every time you add a mod. It's tedious and time consuming, but needs to be done.
Then again, mk-14s were notoriously awful. Very high failure rate. TMO brings the failure rate to close to real life. Your problem may be this feature of TMO. You can test this by turning on "No dud torpedoes."
Of course, you may just simply be forgetting to open the torpedo tube doors.
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Of all the forms of Martial Arts, Karaoke causes the most pain!
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