I would argue that if you install NYGM3_6F you should not apply NYGM_2017 as they change mostly the same files and former is newer. I had issues with NYGM until I omitted re-applied NYGM_2017 and went solely with NYGM3_6F.
My mod soup looks like this and runs just fine:
NYGM Tonnage War V2.5 – Stand Alone Version
NYGM3_New
NYGM3_6F
Supplement to V16B1 (JSGME)
Stiebler4C_Addon_for_V16B1
Functional Draggable Chrono for NYGM
... and blah, blah, blah. Your mileage may vary.
-C
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