Wildcat, no this shouldn't be happening... in the ATP mod I distributed the MPU and the Stallion torpedo have not had any changes made to them at all since 3.02, and the torpedoes (in that version) all still shared the same doctrine that controls torpedo homing.
Has this happened a single time or is it repeatable?
My guess is that in that particular situation, the AI happened to drop two decoys at the exact same time (you can observe this in the replay if the torpedo explodes but the decoy still remains... what happened is one decoy got killed and the other still shows up... this is a "known" issue mentioned in the readme) or you just had some kind of random thing, the doctrine system in DW can sometimes be more spongy that I really like in terms of variables and conditionals (the software literally will do two things with the same code with no real reason that I can figure out sometimes, although fortunately this can be worked around usually).
Thanks guys.
Cheers,
David
PS There is no installer, its just a zip file with two folders and files.
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LW

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