Try looking at Patrols.cfg. Ensure that the tonnage for each patrol is the same as that shown in each corresponding Log_x.cfg file. THEN reconcile the Patrols.cfg figures back to Careers.cfg.
Basically Patrols.cfg lists details for each patrol whereas Careers.cfg lists cumulative details of all patrols at that point in the career.
BTW, SH3Cmdr doesn't use SH3's renown or tonnage based system to determine what awards are available - it uses the historical timeline. It's up to you to decide what you want to award and under what circumstances. If you click on a crew member, you WILL be able to drag ANY qual to them, and likewise at least the EK2. Just click on an image under teh "Available Medals, Badges and Qualifications" and whilst pressing the left mouse button drag it to the appropriate Medals, Badges or Qualifications frame. When the cursor changes to an arrow on a piece of paper, drop it. Press Apply to save your changes.
If this does not work, then pls read the SH3Cmdr FAQ.html file to determine whether you have other system related problems.
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