I dont know if the GW mod changes anything regarding weather, but it is possible that your problem is not caused by mods.
There is always a tiny possibility when installing something to your computer from a CD/DVD, that the drive "jumps" when reading the disc and that results in corrupt install.
Do you use SH3 Commander? If so, try to first uninstall every mod you have using the JSGME. Then 'rollback' the SH Commander, and after that install the mods again.
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