Any mod that uses the same files as another mod is going to overwrite those files. JSGME is nice enough to tell you, so you can decide. The one you need to install last is the one whose file you want to use. In the case of a text file you can find out what exact file is changed and create your own. I do that with the "Commands" file, so no matter what I install I can adjust it accordingly.
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“Never do anything you can't take back.”
—Rocky Russo
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