Did you do a clean install of the game, a clean install of JSGME and then load the mods?
If you didn't there can be lingering files from moving moded files around.
Taking a snapshot after you have already added mods and then removed them is not a 100% accurate way to get a clean snapshot that is done with a clean install of the game and JSGME and taking the snapshot before anything is ever added.
I know your running Win7 but take advice from this thread and make clean installs.
http://www.subsim.com/radioroom/showthread.php?t=133290
Many troubles from skippers are had by not using clean installs.
Generic Mod Enabler - v2.6.0.157
RFB_2.0
RFB_2.0_Patch_23April2010
RSRDC_RFB_V575
RSRDC_V5xx_Patch1
More_DDs_for_AITorpedoLauncher
Improved Ship Physics_2.15
Classe_Balao_CamoTri