You can change torpedos before mission in the same menu where you can apply upgrades e.g. new batteries.
The interface is not very user friendly so you have to mark the torpedo you like to change, then doubleclick the type you want to load. No drag&drop or even mark more than one...
If I'm right on this (and please somone correct me if im not) SH3 Commander adds days spent in base when you start your mission. So it should work when you dock at the milkcow, then exit and reset days spent in base to 1 before "departure". Same after docking at home base.
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commissioned 01APR1941 - 1.Flotilla Brest - 110,000 GRT total - 84 days at sea
*click pic to see how the real U-556 fared*
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