What exactly did you try to do?
If you created a special forces raft (and team) in the mission editor and then tried a script etc. to make them attack something, it (as far as I know) doesn't work, ie. cannot be done. (Someone correct me if I'm wrong.)
If you did that while playing with a submarine, they will first use the raft to go to the shore. After that it will take quite a while until the target will be destroyed, so you must be patient.
It may also be that they were destroyed during transit. (Are there hostiles in the area?)
Miika
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