JSGME does not write to the /Mods folder. It copies from the Mods folder to the /Data file and its subtree. It saves a copy of every file it over-writes in /Mods/!BACKUP!. When it uninstalls, it replaces the uninstalled file in /Data with the saved backup. Everything in your /Mods folder remains exactly as you put it there. The copy of TMO v2.5 in the /Mods folder should be just fine.
But it is onlythe work of a second to click on your copy of the zipped TMO file you downloaded and then drag the unzipped file from WinZip to your /Mods folder. Of course, you did save the download, didn't you?
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