Ah, moving crewmen with special abilities out of the compartment they need to stay in for special abilities will negate the special ability while they are not in the compartment required to have the special ability active. Moving the 'command' slot from a row will significantly reduce the ability of that row and perhaps the entire compartment. If you leave part of your PBJ sammich in the wrong spot it may gummy up the works. And always be prepared to vacate the head without a proper wiping when battle stations sounds.
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-Arlo
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