I am using Conus' WS mod, I did a lot of tweaking to make it compatible with some other mods and to look more the way I wanted... but IIRC I've had no issues with UZO/scope views being messed up and I don't think I changed anything there.
If aspects of the layout/gui appear off-center in some respects I would say the first suspect would be the menu_1024_768.ini file... or that some reconfigured graphics files that the mod uses didn't get installed with it or got overwritten by something else.
You are using GWX3, though, right? I think Conus' mod was made specifically to work with GWX3 as a base, and probably uses the GWX3 menu .ini as a starting point.
What other mods do you have enabled, and in what order?