Sorry, maybe my question was a little confusing...
I have it all working fine on my laptop. So, I was just wondering if I can copy that MODS folder over to another computer? I think that I can do that. I copied it over to my desktop computer where I have a clean install of SH5. I first played the tutorial and docked at Kiev. Then I enabled all of the mods, and opened up my last saved game in the Kiev bunker, and saved that. Exited to Windows. Now it seems to work fine, so I guess that was ok..