There are no problems with the 'so called' missing files.
It's a misguided attempt to define file demands and structures.

Barrage Ballons, mines and nets along with Bouys and such do not need those files.
Sure We could add them to satisfy an error in the codeing of this Validator thing.
But then SH3 will load empty files and eat up even more memory.
And if we look closely?
Even more empty files could be removed but then you'd get more errors.
When even one Modder tries to define how file structures must be done?
We see a constant cluster mess that confuses new people!
S3D even reported errors although the files work just fine.
The first rule is:
If it works?
It works.
The second rule is:
If someone says it's wrong?
They are probably wrong if it's been working for over 2 years!