As a test, as this seems to have worked well with "clashing" mods in the past, I would suggest that SH3Cmdr users that are having problems try these two steps:
1. Perform a rollback in SH3Cmdr.
2. Disable the Atmosphere mod in JSGME and re-enable again.
This combination of steps best "cleans" your SH3 files. Of course, if users *choose* not to install certain files because their files have other features that they don't want to lose, well...
@Kpt Lehmann: No probs with what you're saying - I just wanted to quickly nip in the bud the "it must be SH3Cmdr's fault" approach!
Great looking mod BTW