Improper Mod installs
I've discovered several mods, when installed using JSGME do not do a proper backup. They put another folder in the main game folder named after the mod. This should have gone into the backup/installed folders of JSGME.
I learned this when I 'deleted' what I thought were excess copies of those mods. It was impossible to uninstall them and gain back the files they overwrote. Result = failures.
When that happens, remove all and reinstall.
I wish I could remember the names of those mods to help more, there were several. Anyway, don't delete mod folders found outside of the Mods folder. That is, until you remove all mods first.
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