I really think the guys not repairing is a bug that is overlooked by many. I've dealt with it for over a year using clean mods, ect. It can really get you killed. The problem is on BS repairs will be done by your damage crew, but repairs take much much longer when no one else is repairing. Yea, a simple save and load will fix it, but you usually don't notice it until you're under attack and saving with a lot of contacts isn't a good thing. I just caught it by chance when I noticed the men using the cursor weren't repairing.
It's interesting you also have this issue with a clean install. I've mentioned before and got little response, but I think it may be an issue people are missing.
Check out this link. Make sure you read the SHIV guide and better crew management...
http://forums.ubi.com/eve/forums/a/t...5/m/9661024145