Quote:
Originally Posted by JSGME Help file
One common problem that occurs when extracting mods is known as the “double folder” error. Sometimes you may find that when you extract a mod, instead of the intended folder structure, an extra “layer” has been added. For example, “C:\Games\My Game\MODS\Cool Mod\Cool Mod\data\etc” instead of “C:\Games\My Game\MODS\Cool Mod\ data\etc”. This “double folder” error is the second largest cause of mod problems (behind UAC). Not finding and fixing this problem will lead to mods not being enabled correctly and thus not appearing in game.
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This sounds like your problem.