Unless the guy's a real jerk and not just acting like one right now, I'd make some time to see him and go over the problems you've been having in detail. I don't understand exactly what it is you do or how big this company is, but it is apparent that your boss doesn't understand what is going on, exactly. In my experience, if you prepare a thorough report for him and explain your position politely and respectfully, he'll help you out or at least get off your back. I have yet to meet a boss who doesn't at least take into consideration thoughtful input from employees, or at least explain why this needs to be done thusly by yeasterday.
If that doesn't work and he's still an ass, I'd seek alternative employment as soon as possible. Some people just don't understand that work is not a master-servant relationship.
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