JSGME is only run when you enable or disable a mod.
If you have a broken save file, check other saves. If it's just the one, there's no reason to reinstall.
Morale Mod isn't needed anymore since they fixed the morale issues.
Silent Fire basically breaks the game to make it silly essentially, so basing any kind of opinions of the game on that mod isn't really accurate. If you just want to speed across the oceans nuking everything in site, it's cool, but trying to "play" the game with it loaded is not going to happen.
__________________
|