I think your problems may well be caused (at least in part) by your discrepant type VII interior files.
As mentioned by Privateer on your other thread, your modlist does not include any open hatch mod - yet your screenshots show you have one...on the Control Room side at least!!
And the content and sizes do not match with those to be expected on a GWX setup.
Furthermore, the interior graphics shown in your pics are those from NYGM/WAC - not GWX.
Possibly time for a GWX reinstall??
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