Hmm, that does sound strange...
I'm not quite sure what could be causing that, but a few things does spring to mind:
-Did you get a new conning tower? That would require that you install the proper new camouflage via the mod folders. (this of cause also applies to a new u-boat)
-Try selecting the standard paint scheme in the base, before your next patrol. The mod replaces the standart non camouflage paint job for the relevant u-boat/conning tower combination.
-The paint scheme shown in base is sometimes not the one actually applied to the boat, did you start the patrol, and still have the problem, or did you only try reloading in base?
I know the feeling, I had to redownload and reinstall all my Ubisoft games today, because of a problem with the Ubi Launcher...they're testing my nerves!
I'll see if I can't think of more things that could be causing this, if the few things I just mentioned didn't work.
