JScones,
What I do is disable them and copy the whole mods folder (excluding the !BACKUP, !INSTLOGS and JSGME.ini) onto a usb drive and move them to the other computer.
This would make it easier;
Export option with an 'export to' browse button. Option to select mods individually, left pane only, right pane only, or by dividers/tabs (explained below).
Import option with 'import from/to' browse button.
Label-able dividers or tabs in the left pane to help keep things sorted when importing. Option to enable by those dividers. I know about the profile function and it works great once mods are enabled, but there is no way to set up those without first enabling them, this would accomplish that.
This can kind of be done now, but it is necessary to merge mods into one folder which gets confusing when there are so many, and you have no way of determining conflicts unless you enable them individually first (explorer I guess, but that's a little unhandy). If you could put mods into mod groups then just click tabs to see what's in each mod group it'd be a lot easier to keep things straight.
Getting long winded here, but if it would be possible have an option to compare mods for compatibility and save that report to a text file, also if the conflict warning messages could be saved to a text file..
A log would also be helpful.
I realize this is a long list, but you asked
.
Cdr