The cmputil.exe file in WARPAINTS.ZIP seems to be an older version. After a quick search I found a newer version. Worked for me.
http://www.commanders-academy.com/wiki/index.php?title=Modding_Tools&diff=prev&oldid=512
After unzipping WARPAINTS, copy the cmptutil over the old one and follow directions from WARPAINTS.
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