I take it you installed a mods folder using jsgme into you game dir. Seem's so many put the mod's folder in the data file or outside the game dir. Once you open the SH4 dir, you should see all your game files, ect. GME can show an activated mod, but in the wrong place it will not load.
However, I doubt that's your problem.
It's been a long time and I'll research it if no one answers, something to do with the startup movie and deleting that usually fixes it, but this was limited to certain video drivers.
If you're patched to 1.5, you're up to date and ready for 1.7.
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