I had problems with mods conflicting- when I went in and manually added the floatplanes, bases and ships, THEN ran mods using Jones, I had no problems.
I realize that's not the point, nor the purpose of the JGSME, but I had 3 different mods conflicting, and I wanted to run them all...so I backed up my files, hard coded the mods I really wanted to run bad, then added the others using the enabler. Perhaps not as elegant, but I enjoy adding a lot of the "fluff" that makes this a better game, and this seemed to me like the optimal solution.
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